PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000340.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 392aa    MW: 43733.2 Da    PI: 8.8661
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000340.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.84.5e-065476123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             y+C++C++ F r  nL+ H r+H
  Itr_sc000340.1_g00001.1 54 YVCEICNQGFQRDQNLQMHRRRH 76
                             9*********************9 PP

2zf-C2H2163.5e-05131153123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++C++C+k +  +s++k H++t+
  Itr_sc000340.1_g00001.1 131 WVCGKCSKGYAVQSDYKAHLKTC 153
                              58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.98E-55177No hitNo description
Gene3DG3DSA:3.30.160.601.5E-55376IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00525476IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.975476IPR007087Zinc finger, C2H2
PROSITE patternPS0002805676IPR007087Zinc finger, C2H2
SMARTSM0035519095125IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.3E-4122152IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355100131158IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009590Biological Processdetection of gravity
GO:0009959Biological Processnegative gravitropism
GO:0009965Biological Processleaf morphogenesis
GO:0010031Biological Processcircumnutation
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0048444Biological Processfloral organ morphogenesis
GO:2000012Biological Processregulation of auxin polar transport
GO:2000904Biological Processregulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MLANNTPSSS SEPFATLDNG SNNSKRKRRP AGTPDPDAEV VSLSPKTLLE SDRYVCEICN  60
QGFQRDQNLQ MHRRRHKVPW KLLKRETPVV RKRVFVCPEP TCLHHDPCHA LGDLVGIKKH  120
FRRKHSNQKQ WVCGKCSKGY AVQSDYKAHL KTCGTRGHSC DCGRVFSRVE SFIEHQDACS  180
MGRLRSESQS HLQPAGACLS RTASSPSPSS DTNLSAAAAP WPLLMSKPAT FMDATPKPHN  240
LELQLLTTTS ASSSRFDVSV TSKTDEDQST QLQLSIGSSS DFDAREQLRL AMAEKAYAEE  300
ARQQAKRQIE LAEQELANAK RIRQQAQEDL DKAQAMREHA IKQINSTLAQ ITCHACKHKF  360
EAPRPEHYNS SSMEFSYISS SSMALTEGHG QK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00254DAPTransfer from AT2G01940Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009777609.10.0PREDICTED: protein SHOOT GRAVITROPISM 5-like
SwissprotF4IPE31e-146IDD15_ARATH; Protein SHOOT GRAVITROPISM 5
TrEMBLA0A061GQZ70.0A0A061GQZ7_THECC; C2H2-like zinc finger protein
STRINGPOPTR_0012s03730.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10222482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01940.11e-141C2H2-like zinc finger protein